Bioinformatics and Computational GenomicsMSc - Courses - Queen's University Belfast | Posteezy

Note that the HMM includes hidden states for promoter regions, the start and stop codons, exons, introns, and the noncoding DNA falling between different genes. Emission probabilities control the frequency of the four nucleotides found at each type of hidden state. Hidden Markov models (HMMs) are a class of mathematical tools that excel at identifying this type of feature.

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